funrar - Functional Rarity Indices Computation

Computes functional rarity indices as proposed by Violle et al. (2017) <doi:10.1016/j.tree.2017.02.002>. Various indices can be computed using both regional and local information. Functional Rarity combines both the functional aspect of rarity as well as the extent aspect of rarity. 'funrar' is presented in Grenié et al. (2017) <doi:10.1111/ddi.12629>.

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ecological-modelsecologyraritytraits

8.33 score 17 stars 2 dependents 348 scripts 425 downloads

fundiversity - Easy Computation of Functional Diversity Indices

Computes six functional diversity indices. These are namely, Functional Divergence (FDiv), Function Evenness (FEve), Functional Richness (FRic), Functional Richness intersections (FRic_intersect), Functional Dispersion (FDis), and Rao's entropy (Q) (reviewed in Villéger et al. 2008 <doi:10.1890/07-1206.1>). Provides efficient, modular, and parallel functions to compute functional diversity indices (Grenié & Gruson 2023 <doi:10.1111/ecog.06585>).

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biodiversitybiodiversity-indicatorsbiodiversity-informaticsfunctional-diversityfunctional-ecologyfunctional-traitfunctional-traitstraittrait-basedtraits

8.03 score 42 stars 1 dependents 43 scripts 427 downloads

fundiversity - Easy Computation of Functional Diversity Indices

Computes six functional diversity indices. These are namely, Functional Divergence (FDiv), Function Evenness (FEve), Functional Richness (FRic), Functional Richness intersections (FRic_intersect), Functional Dispersion (FDis), and Rao's entropy (Q) (reviewed in Villéger et al. 2008 <doi:10.1890/07-1206.1>). Provides efficient, modular, and parallel functions to compute functional diversity indices (Grenié & Gruson 2023 <doi:10.1111/ecog.06585>).

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biodiversitybiodiversity-indicatorsbiodiversity-informaticsfunctional-diversityfunctional-ecologyfunctional-traitfunctional-traitstraittrait-basedtraits

8.03 score 42 stars 1 dependents 43 scripts 390 downloads

ecolottery - Coalescent-Based Simulation of Ecological Communities

Coalescent-Based Simulation of Ecological Communities as proposed by Munoz et al. (2018) <doi:10.1111/2041-210X.12918>. The package includes a tool for estimating parameters of community assembly by using Approximate Bayesian Computation.

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6.26 score 15 stars 1 dependents 20 scripts 692 downloads

funbiogeo - Functional Biogeography Analyses

Helps users with analyses in functional biogeogeography by loading and combining data, computing trait coverage, as well as computing functional diversity indices, drawing maps, correlating them with the environment, and upscaling assemblages.

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functional-biogeographyfunctional-diversityfunctional-trait

5.86 score 12 stars 24 scripts

rromeo - Access Publisher Copyright & Self-Archiving Policies via the 'SHERPA/RoMEO' API

Fetches information from the 'SHERPA/RoMEO' API <http://www.sherpa.ac.uk/romeo/apimanual.php> which indexes policies of journal regarding the archival of scientific manuscripts before and/or after peer-review as well as formatted manuscripts.

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api-clientsherpa-romeo

4.45 score 14 stars 7 scripts 9 downloads

rtaxref - An R client for TaxRef the French Taxonomical Database

Provides an R client to the TaxRef API <https://taxref.mnhn.fr/taxref-web/api/doc>, the French Taxonomical Reference Database which indexes names of species with unique identifiers as well as conservation statuses, biological interactions and taxonomic relationships.

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apiapi-clientapi-wrapperbiodiversitytaxonomy

3.54 score 7 stars 4 scripts

bnfimage - 'BnF Image API' Client

Provides an R client for the image API of 'Bibliothèque Nationale de France' (BnF, National Library of France) <https://api.bnf.fr/api-iiif-de-recuperation-des-images-de-gallica#/>.

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3.00 score 2 stars 5 scripts

fdcoexist - Multi-Species Trait-Based Coexistence Model in Discrete time

A modified Beverton-Holt model used in the Denelle, Grenié et al. manuscript that expresses environmental filtering, limiting similarity and hierarchical competition explicitely in function of species traits. This package provides all the code necessary to rerun the analyses of the manuscript.

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2.70 score 1 scripts

fddimensionality - Test Effect of Traits of FD-Environment Relationship

Companion code for paper XXX <doi:xxx> on FD-Environment relationship, which tests to what extent we can expect FD-Environment trait relationship in function of number of traits included and type of environmental filtering.

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1.70 score