fundiversity - Easy Computation of Functional Diversity Indices
Computes six functional diversity indices. These are namely, Functional Divergence (FDiv), Function Evenness (FEve), Functional Richness (FRic), Functional Richness intersections (FRic_intersect), Functional Dispersion (FDis), and Rao's entropy (Q) (reviewed in Villéger et al. 2008 <doi:10.1890/07-1206.1>). Provides efficient, modular, and parallel functions to compute functional diversity indices (Grenié & Gruson 2023 <doi:10.1111/ecog.06585>).
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biodiversitybiodiversity-indicatorsbiodiversity-informaticsfunctional-diversityfunctional-ecologyfunctional-traitfunctional-traitstraittrait-basedtraits
8.16 score 45 stars 1 dependents 53 scripts 528 downloadsfundiversity - Easy Computation of Functional Diversity Indices
Computes six functional diversity indices. These are namely, Functional Divergence (FDiv), Function Evenness (FEve), Functional Richness (FRic), Functional Richness intersections (FRic_intersect), Functional Dispersion (FDis), and Rao's entropy (Q) (reviewed in Villéger et al. 2008 <doi:10.1890/07-1206.1>). Provides efficient, modular, and parallel functions to compute functional diversity indices (Grenié & Gruson 2023 <doi:10.1111/ecog.06585>).
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biodiversitybiodiversity-indicatorsbiodiversity-informaticsfunctional-diversityfunctional-ecologyfunctional-traitfunctional-traitstraittrait-basedtraits
8.16 score 45 stars 1 dependents 53 scripts 528 downloads
funrar - Functional Rarity Indices Computation
Computes functional rarity indices as proposed by Violle et al. (2017) <doi:10.1016/j.tree.2017.02.002>. Various indices can be computed using both regional and local information. Functional Rarity combines both the functional aspect of rarity as well as the extent aspect of rarity. 'funrar' is presented in Grenié et al. (2017) <doi:10.1111/ddi.12629>.
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ecological-modelsecologyraritytraits
7.93 score 17 stars 1 dependents 275 scripts 549 downloads
funbiogeo - Streamlining Functional Biogeography Analyses
Helps users with analyses in functional biogeography by loading and combining data, computing trait coverage, as well as computing functional diversity indices, drawing maps, correlating them with the environment, and upscaling assemblages.
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functional-biogeographyfunctional-diversityfunctional-trait
6.36 score 12 stars 24 scripts 290 downloadsecolottery - Coalescent-Based Simulation of Ecological Communities
Coalescent-Based Simulation of Ecological Communities as proposed by Munoz et al. (2018) <doi:10.1111/2041-210X.12918>. The package includes a tool for estimating parameters of community assembly by using Approximate Bayesian Computation.
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5.71 score 15 stars 17 scripts 490 downloadsrtaxref - An R client for TaxRef the French Taxonomical Database
Provides an R client to the TaxRef API <https://taxref.mnhn.fr/taxref-web/api/doc>, the French Taxonomical Reference Database which indexes names of species with unique identifiers as well as conservation statuses, biological interactions and taxonomic relationships.
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apiapi-clientapi-wrapperbiodiversitytaxonomy
3.54 score 7 stars 4 scriptsrromeo - Access Publisher Copyright & Self-Archiving Policies via the 'SHERPA/RoMEO' API
Fetches information from the 'SHERPA/RoMEO' API <http://www.sherpa.ac.uk/romeo/apimanual.php> which indexes policies of journal regarding the archival of scientific manuscripts before and/or after peer-review as well as formatted manuscripts.
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api-clientsherpa-romeo
4.45 score 14 stars 8 scripts 13 downloads