Package: ecolottery 2.0.0

François Munoz

ecolottery: Coalescent-Based Simulation of Ecological Communities

Coalescent-Based Simulation of Ecological Communities as proposed by Munoz et al. (2018) <doi:10.1111/2041-210X.12918>. The package includes a tool for estimating parameters of community assembly by using Approximate Bayesian Computation.

Authors:François Munoz [aut, cre], Matthias Grenié [aut], Pierre Denelle [aut], Elizabeth Barthelemy [aut], Adrien Taudière [ctb], Fabien Laroche [ctb], Caroline Tucker [ctb], Cyrille Violle [ctb]

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# Install 'ecolottery' in R:
install.packages('ecolottery', repos = c('https://rekyt.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/frmunoz/ecolottery/issues

On CRAN:

6.18 score 15 stars 1 packages 17 scripts 503 downloads 1 mentions 18 exports 89 dependencies

Last updated 2 years agofrom:cbd4fe296d. Checks:1 OK, 6 WARNING. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKJan 24 2025
R-4.5-winWARNINGJan 24 2025
R-4.5-linuxWARNINGJan 24 2025
R-4.4-winWARNINGJan 24 2025
R-4.4-macWARNINGJan 24 2025
R-4.3-winWARNINGJan 24 2025
R-4.3-macWARNINGJan 24 2025

Exports:abundcoalesccoalesc_abccoalesc_abc_stdcoalesc_easyABCdo.simul.coalescforwardgauss_limitgenerate_priorget_number_of_gensinitial_checkspickpick.immigratepick.mutateplot_commprdch4coalescsumstatstcor

Dependencies:abcabc.dataabindade4apecliclusterclusterGenerationcodacodetoolscolorspacecombinatcpp11data.tableDEoptimdeSolvedigestdoParallelEasyABCexpmfansifarverfastmatchFDforeachgeigergenericsgeometryggplot2gluegtablehillRigraphisobanditeratorslabelinglatticelazyevallhslifecyclelinproglocfitlpSolvemagicmagrittrmapsMASSMatrixMatrixModelsmgcvmnormtmomentsmunsellmvtnormncbitnlmennetnumDerivoptimParallelpbapplypermutephangornphytoolspillarpixmappkgconfigplsplyrquadprogquantregR6RColorBrewerRcppRcppArmadilloRcppProgressrlangscalesscatterplot3dspSparseMsubplexsurvivaltensorAtibbleutf8vctrsveganviridisLitewithr

coalesc_abc function with a site-species matrix: example with Barro-Colorado dataset.

François MUNOZ and Pierre DENELLE

Rendered fromBarro_Colorado.Rmdusingknitr::rmarkdownon Jan 24 2025.

Last update: 2019-04-03
Started: 2017-04-21

Appendix 1: basic functions and examples

François MUNOZ and Pierre DENELLE

Rendered fromcoalesc_vignette.Rmdusingknitr::rmarkdownon Jan 24 2025.

Last update: 2020-04-02
Started: 2016-12-07